A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2019-02-18, 17:50 based on data in:
/home/tavinbio/transcriptome_virus_renato/d1_rRNA_logs
General Statistics
Showing 36/36 rows and 1/1 columns.| Sample Name | % Aligned |
|---|---|
| logrrna_Mock1_L001 | 46.8% |
| logrrna_Mock1_L002 | 46.8% |
| logrrna_Mock1_L003 | 46.9% |
| logrrna_Mock1_L004 | 46.8% |
| logrrna_Mock2_L001 | 22.7% |
| logrrna_Mock2_L002 | 22.7% |
| logrrna_Mock2_L003 | 22.8% |
| logrrna_Mock2_L004 | 22.7% |
| logrrna_Mock3_L001 | 37.8% |
| logrrna_Mock3_L002 | 37.8% |
| logrrna_Mock3_L003 | 37.9% |
| logrrna_Mock3_L004 | 37.8% |
| logrrna_OROV1_L001 | 68.8% |
| logrrna_OROV1_L002 | 68.7% |
| logrrna_OROV1_L003 | 68.8% |
| logrrna_OROV1_L004 | 68.8% |
| logrrna_OROV2_L001 | 75.9% |
| logrrna_OROV2_L002 | 75.8% |
| logrrna_OROV2_L003 | 76.0% |
| logrrna_OROV2_L004 | 75.9% |
| logrrna_OROV3_L001 | 73.5% |
| logrrna_OROV3_L002 | 73.5% |
| logrrna_OROV3_L003 | 73.6% |
| logrrna_OROV3_L004 | 73.6% |
| logrrna_ZIKAV1_L001 | 74.7% |
| logrrna_ZIKAV1_L002 | 74.5% |
| logrrna_ZIKAV1_L003 | 74.8% |
| logrrna_ZIKAV1_L004 | 74.6% |
| logrrna_ZIKAV2_L001 | 71.4% |
| logrrna_ZIKAV2_L002 | 71.3% |
| logrrna_ZIKAV2_L003 | 71.4% |
| logrrna_ZIKAV2_L004 | 71.3% |
| logrrna_ZIKAV3_L001 | 63.8% |
| logrrna_ZIKAV3_L002 | 63.7% |
| logrrna_ZIKAV3_L003 | 64.0% |
| logrrna_ZIKAV3_L004 | 63.8% |
Bowtie 2
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
This plot shows the number of reads aligning to the reference in different ways.
Please note that single mate alignment counts are halved to tally with pair counts properly.
There are 6 possible types of alignment: PE mapped uniquely: Pair has only one occurence in the reference genome. PE mapped discordantly uniquely: Pair has only one occurence but not in proper pair. PE one mate mapped uniquely: One read of a pair has one occurence. PE multimapped: Pair has multiple occurence. PE one mate multimapped: One read of a pair has multiple occurence. PE neither mate aligned: Pair has no occurence.
